| Gene Table |
|
Table containing a summary of the fruit
fly genes to be analyzed. (See Weir, Eaton & Rice 2005 table 1 for
explanation of 3 parsing runs) |
| Intron Table |
|
Table containing a summary the introns to
be analyzed. (See Weir, Eaton & Rice 2005 table 1 for explanation of
3 parsing runs) |
| Splice Site Table |
|
Table containing a summary of the splice
sites to be analyzed. (See Weir, Eaton & Rice 2005 table 1 for
explanation of 3 parsing runs) |
| Start Position |
|
Position relative to the splice site at
which to begin building and scoring the info matrix. (Generally: -8 for
Donor, -12 for Acceptor) |
| Finish Position |
|
Position relative to the splice site at
which to stop building or scoring info matrix. (Generally: 12 for
Donors, 8 for Acceptors) |
| Site Type |
|
Analyze either Donors or Acceptors |
| Number of Refence Sequences |
|
Number of splice site genes matching all other criteria to be included in the reference set. (High number affects performance) |
| Reference Set: Minimum Intron Length |
|
Smallest intron to be allowed in the reference set. (0 ignores minimum length requirement) |
| Reference Set: Maximum Intron Length |
|
Largest intron allowed into the reference set. (0 ignores maximum length requirement) |
| Test Set: Minimum Intron Length |
|
Smallest intron to be allowed into the test set. (0 ignores minimum length requirement) |
| Test Set: Maximum Intron Length |
|
Largest intron to be allowed into the test set. (0 ignores maximum length requirement) |
| Sequence Display |
|
Set to "yes" to display sequence strings after computation. |
| Histogram Display |
|
Select "yes" to display histogram after computation. |
| Display Reference Information |
|
Select "yes" to display reference set information after computation. |