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ClustalW Multiple Sequence Alignment Results

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Page 1.1
                     1            15 16           30 31           45 46           60 61           75 76           90 
    1 Drosophila_Ubx -QASNHTFYPWMAIA GTNGLRRRGRQTYTR YQTLELEKEFHTNHY LTRRRRIEMAHALSL TERQIKIWFQNRRMK LKKEIQA------     81
    2 Drosophila_ftz --------------- ---XDSKRTRQTYTR YQTLELEKEFHFNRY ITRRRRIDIANALSL SERQIKIWFQNRRMK SKKDRTLDSSPEH     70
    3 Drosophila_en  --------------- -----EKRPRTAFSS EQLARLKREFNENRY LTERRRQQLSSELGL NEAQIKIWFQNKRAK IKKST--------     60
    4 Drosophila_prd EDISDSESEPGIALK ---RKQRRSRTTFSA SQLDELERAFERTQY PDIYTREELAQRTNL TEARIQVWFQNRRAR LRKQHTSVS----     81

Alignment Data (Fasta format)

>Drosophila_Ubx
-QASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRR
RIEMAHALSLTERQIKIWFQNRRMKLKKEIQA------
>Drosophila_ftz
------------------XDSKRTRQTYTRYQTLELEKEFHFNRYITRRR
RIDIANALSLSERQIKIWFQNRRMKSKKDRTLDSSPEH
>Drosophila_en
--------------------EKRPRTAFSSEQLARLKREFNENRYLTERR
RQQLSSELGLNEAQIKIWFQNKRAKIKKST--------
>Drosophila_prd
EDISDSESEPGIALK---RKQRRSRTTFSASQLDELERAFERTQYPDIYT
REELAQRTNLTEARIQVWFQNRRARLRKQHTSVS----

Try the BCM JAVA Alignment Viewer and Editor

To prepare a publishable output of this alignment, try the BOXSHADE server.
Copy the alignment output (highlighted in green) and choose 'other' for Input sequence format.

Kim C. Worley, Human Genome Sequencing Center, Baylor College of Medicine
sl-help@bcm.tmc.edu