>ref|NP_536752.1|  ultrabithorax, isoform A [Drosophila melanogaster]
 sp|P83949.1|UBX_DROME  RecName: Full=Homeotic protein ultrabithorax
 sp|P83950.1|UBX_DROSI  RecName: Full=Homeotic protein ultrabithorax
 emb|CAA53803.1|  homeotic ultrabithorax protein [Drosophila melanogaster]
 emb|CAA29194.1|  Ultrabithorax gene product [Drosophila melanogaster]
 gb|AAD16402.1|  Ultrabithorax [Drosophila simulans]
 gb|AAF55355.2|  ultrabithorax, isoform A [Drosophila melanogaster]
Length=389

 GENE ID: 42034 Ubx | Ultrabithorax [Drosophila melanogaster]
(Over 100 PubMed links)

 Score =  792 bits (2046),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/389 (100%), Positives = 389/389 (100%), Gaps = 0/389 (0%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389


>gb|AAA84412.1|  UBXIB [Drosophila melanogaster]
Length=389

 Score =  789 bits (2037),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 388/389 (99%), Positives = 388/389 (99%), Gaps = 0/389 (0%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAAC KIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACYKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389


>ref|XP_002097268.1|  GE26131 [Drosophila yakuba]
 gb|EDW96980.1|  GE26131 [Drosophila yakuba]
Length=381

 GENE ID: 6536696 Dyak\GE26131 | GE26131 gene product from transcript GE26131-RA
[Drosophila yakuba] (10 or fewer PubMed links)

 Score =  612 bits (1578),  Expect = 3e-173, Method: Compositional matrix adjust.
 Identities = 379/390 (97%), Positives = 379/390 (97%), Gaps = 10/390 (3%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNA NANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAPNANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLHQASNHTF  239
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG AAAQTAAASSLHQASNHTF
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAAQTAAASSLHQASNHTF  240

Query  240  YPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR  299
            YPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR
Sbjct  241  YPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR  291

Query  300  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  359
            QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
Sbjct  292  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  351

Query  360  LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  352  LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  381


>ref|NP_732172.1|  ultrabithorax, isoform E [Drosophila melanogaster]
 gb|AAN13718.1|  ultrabithorax, isoform E [Drosophila melanogaster]
 gb|AAQ23559.1|  RE43738p [Drosophila melanogaster]
 gb|ACL85516.1|  Ubx-PE [synthetic construct]
 gb|ACL90398.1|  Ubx-PE [synthetic construct]
Length=380

 GENE ID: 42034 Ubx | Ultrabithorax [Drosophila melanogaster]
(Over 100 PubMed links)

 Score =  609 bits (1571),  Expect = 2e-172, Method: Compositional matrix adjust.
 Identities = 380/389 (98%), Positives = 380/389 (98%), Gaps = 9/389 (2%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  291

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  292  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  351

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  352  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  380


>gb|AAA84408.1|  UBXIA [Drosophila melanogaster]
Length=380

 Score =  607 bits (1564),  Expect = 1e-171, Method: Compositional matrix adjust.
 Identities = 379/389 (97%), Positives = 379/389 (97%), Gaps = 9/389 (2%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAAC KIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACYKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  291

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  292  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  351

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  352  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  380


>ref|XP_001979833.1|  GG16812 [Drosophila erecta]
 gb|EDV48791.1|  GG16812 [Drosophila erecta]
Length=381

 GENE ID: 6552475 Dere\GG16812 | GG16812 gene product from transcript GG16812-RA
[Drosophila erecta] (10 or fewer PubMed links)

 Score =  605 bits (1559),  Expect = 5e-171, Method: Compositional matrix adjust.
 Identities = 380/390 (97%), Positives = 380/390 (97%), Gaps = 10/390 (3%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLHQASNHTF  239
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG AAAQTAAASSLHQASNHTF
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAAQTAAASSLHQASNHTF  240

Query  240  YPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR  299
            YPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR
Sbjct  241  YPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR  291

Query  300  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  359
            QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
Sbjct  292  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  351

Query  360  LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  352  LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  381


>ref|NP_732173.1|  ultrabithorax, isoform C [Drosophila melanogaster]
 gb|AAN13719.1|  ultrabithorax, isoform C [Drosophila melanogaster]
Length=372

 GENE ID: 42034 Ubx | Ultrabithorax [Drosophila melanogaster]
(Over 100 PubMed links)

 Score =  593 bits (1530),  Expect = 1e-167, Method: Compositional matrix adjust.
 Identities = 372/389 (96%), Positives = 372/389 (96%), Gaps = 17/389 (4%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAGECPEDPTKS                 KRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIAGECPEDPTKS-----------------KRYSESLAGSLLPDWLGTNGLRRRGRQ  283

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  284  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  343

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  344  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  372


>gb|AAA84411.1|  UBXIIB [Drosophila melanogaster]
Length=372

 Score =  591 bits (1524),  Expect = 6e-167, Method: Compositional matrix adjust.
 Identities = 371/389 (95%), Positives = 371/389 (95%), Gaps = 17/389 (4%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAAC KIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACYKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAGECPEDPTKS                 KRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIAGECPEDPTKS-----------------KRYSESLAGSLLPDWLGTNGLRRRGRQ  283

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  284  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  343

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  344  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  372


>ref|XP_001953761.1|  GF17924 [Drosophila ananassae]
 gb|EDV42322.1|  GF17924 [Drosophila ananassae]
Length=391

 GENE ID: 6500705 Dana\GF17924 | GF17924 gene product from transcript GF17924-RA
[Drosophila ananassae] (10 or fewer PubMed links)

 Score =  574 bits (1480),  Expect = 6e-162, Method: Compositional matrix adjust.
 Identities = 355/391 (91%), Positives = 356/391 (91%), Gaps = 5/391 (1%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQ+ASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQSASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAG YKQDCLNIKAD VNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAG-YKQDCLNIKADTVNGYKDIWNTGGSNGGGGGGGGGG  119

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGG  G  G G   G  A     QNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  120  GGGGTGAAGNGANGGNTANANG-QNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  178

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAG--AGTAWNANCTISGAAAQTAAA-SSLHQASNH  237
            GSAGGNVSVSGG G  G      GV    AGTAWNANCTISGAAA   AA SSLHQASNH
Sbjct  179  GSAGGNVSVSGGAGGGGNGGVQSGVGVAGAGTAWNANCTISGAAAAQTAAASSLHQASNH  238

Query  238  TFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  297
            TFYPWMAIAGECPEDP KSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR
Sbjct  239  TFYPWMAIAGECPEDPAKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  298

Query  298  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  357
            GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI
Sbjct  299  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  358

Query  358  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLD  388
            KELNEQEKQAQAQKAAAAAAAAAAVQGGHLD
Sbjct  359  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLD  389


>ref|NP_732171.1|  ultrabithorax, isoform D [Drosophila melanogaster]
 gb|AAN13717.1|  ultrabithorax, isoform D [Drosophila melanogaster]
 gb|ADK27789.1|  LD09363p [Drosophila melanogaster]
Length=363

 GENE ID: 42034 Ubx | Ultrabithorax [Drosophila melanogaster]
(Over 100 PubMed links)

 Score =  568 bits (1464),  Expect = 5e-160, Method: Compositional matrix adjust.
 Identities = 363/389 (93%), Positives = 363/389 (93%), Gaps = 26/389 (7%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIA                          GKRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIA--------------------------GKRYSESLAGSLLPDWLGTNGLRRRGRQ  274

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  275  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  334

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  335  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  363


>gb|AAA84409.1|  UBXIIA [Drosophila melanogaster]
Length=363

 Score =  565 bits (1456),  Expect = 4e-159, Method: Compositional matrix adjust.
 Identities = 362/389 (93%), Positives = 362/389 (93%), Gaps = 26/389 (7%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAAC KIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACYKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIA                          GKRYSESLAGSLLPDWLGTNGLRRRGRQ
Sbjct  241  PWMAIA--------------------------GKRYSESLAGSLLPDWLGTNGLRRRGRQ  274

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  275  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  334

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  335  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  363


>gb|AAQ67269.1|  ultrabithorax [Drosophila virilis]
Length=387

 Score =  558 bits (1438),  Expect = 5e-157, Method: Compositional matrix adjust.
 Identities = 332/392 (85%), Positives = 341/392 (87%), Gaps = 9/392 (2%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAA-YRGFPLSLGMSPYANHHLQR  59
            MNSYFEQASGFYGHPHQATGM MG+GGHHDQT ++AAAA YRGFPLSLGMSPYANHHLQR
Sbjct  1    MNSYFEQASGFYGHPHQATGMTMGTGGHHDQTTASAAAAAYRGFPLSLGMSPYANHHLQR  60

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
            TTQDSPYDASITAACNKIYGD   AYKQDCLNIKADAVNGYKDIWNTGG+       GGG
Sbjct  61   TTQDSPYDASITAACNKIYGDAGSAYKQDCLNIKADAVNGYKDIWNTGGA------NGGG  114

Query  120  GGGGAGGTGGAGNANGGNAANA-NGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSH  178
            GGGG GG      +NG NA NA NGQNN  GGMPVRPSACTPDSRVGGYLDTSGGSPVSH
Sbjct  115  GGGGGGGATAGNTSNGSNAPNAANGQNNAGGGMPVRPSACTPDSRVGGYLDTSGGSPVSH  174

Query  179  RGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAA-SSLHQASNH  237
            RGG + G  + + G           G  GAGTAWNANCTISGAAA   AA SSLHQASNH
Sbjct  175  RGGGSAGGGNGTAGGVPQNTASGVGGGVGAGTAWNANCTISGAAAAQTAAASSLHQASNH  234

Query  238  TFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  297
            TFYPWMAIAGE   DP+KSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR
Sbjct  235  TFYPWMAIAGESTADPSKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  294

Query  298  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  357
            GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI
Sbjct  295  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  354

Query  358  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  355  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  386


>ref|NP_996219.1|  ultrabithorax, isoform F [Drosophila melanogaster]
 gb|AAS65158.1|  ultrabithorax, isoform F [Drosophila melanogaster]
Length=355

 GENE ID: 42034 Ubx | Ultrabithorax [Drosophila melanogaster]
(Over 100 PubMed links)

 Score =  551 bits (1419),  Expect = 7e-155, Method: Compositional matrix adjust.
 Identities = 355/389 (91%), Positives = 355/389 (91%), Gaps = 34/389 (9%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIAGECPEDPTKS                                  TNGLRRRGRQ
Sbjct  241  PWMAIAGECPEDPTKS----------------------------------TNGLRRRGRQ  266

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  267  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  326

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  327  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  355


>ref|XP_002072909.1|  GK13855 [Drosophila willistoni]
 gb|EDW83895.1|  GK13855 [Drosophila willistoni]
Length=384

 GENE ID: 6651232 Dwil\GK13855 | GK13855 gene product from transcript GK13855-RA
[Drosophila willistoni] (10 or fewer PubMed links)

 Score =  550 bits (1416),  Expect = 2e-154, Method: Compositional matrix adjust.
 Identities = 342/394 (87%), Positives = 347/394 (88%), Gaps = 16/394 (4%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMG+GGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGTGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGA AYKQDCLNIKAD+VNGYKDIWNT G N GGGGGG GG
Sbjct  61   TQDSPYDASITAACNKIYGDGASAYKQDCLNIKADSVNGYKDIWNT-GGNNGGGGGGTGG  119

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGG GG GG  +        ANGQNN AGGMPVRPSACTPDSRV GYLDTSGGSPVSHRG
Sbjct  120  GGGGGGAGGNASNGSNGGNTANGQNNAAGGMPVRPSACTPDSRV-GYLDTSGGSPVSHRG  178

Query  181  GSA---GGNVSVSGGNGNAGGVQSGVGV-AGAGTAWNANCTISG-AAAQTAAASSLHQAS  235
             SA        V GG G      +GVGV +GAGTAWNANCTISG AAAQTAAASSLHQAS
Sbjct  179  SSAGGNVSAGGVGGGGGGGQSGATGVGVGSGAGTAWNANCTISGAAAAQTAAASSLHQAS  238

Query  236  NHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLR  295
            NHTFYPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLR
Sbjct  239  NHTFYPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLR  289

Query  296  RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ  355
            RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ
Sbjct  290  RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ  349

Query  356  AIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            AIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  350  AIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  383


>ref|XP_002053505.1|  ultrabithorax [Drosophila virilis]
 gb|EDW67025.1|  ultrabithorax [Drosophila virilis]
Length=378

 GENE ID: 6631129 Dvir\Ubx | Ultrabithorax [Drosophila virilis]
(10 or fewer PubMed links)

 Score =  538 bits (1387),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 327/392 (83%), Positives = 335/392 (85%), Gaps = 18/392 (5%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAA-YRGFPLSLGMSPYANHHLQR  59
            MNSYFEQASGFYGHPHQATGM MG+GGHHDQT ++AAAA YRGFPLSLGMSPYANHHLQR
Sbjct  1    MNSYFEQASGFYGHPHQATGMTMGTGGHHDQTTASAAAAAYRGFPLSLGMSPYANHHLQR  60

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
            TTQDSPYDASITAACNKIYGD   AYKQDCLNIKADAVNGYKDIWNTGG+       GGG
Sbjct  61   TTQDSPYDASITAACNKIYGDAGSAYKQDCLNIKADAVNGYKDIWNTGGA------NGGG  114

Query  120  GGGGAGGTGGAGNANGGNAANA-NGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSH  178
            GGGG GG      +NG NA NA NGQNN  GGMPVRPSACTPDSRVGGYLDTSGGSPVSH
Sbjct  115  GGGGGGGATAGNTSNGSNAPNAANGQNNAGGGMPVRPSACTPDSRVGGYLDTSGGSPVSH  174

Query  179  RGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAA-SSLHQASNH  237
            RGG + G  + + G           G  GAGTAWNANCTISGAAA   AA SSLHQASNH
Sbjct  175  RGGGSAGGGNGTAGGVPQNTASGVGGGVGAGTAWNANCTISGAAAAQTAAASSLHQASNH  234

Query  238  TFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  297
            TFYPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR
Sbjct  235  TFYPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  285

Query  298  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  357
            GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI
Sbjct  286  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  345

Query  358  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  346  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  377


>ref|XP_002014162.1|  GL23004 [Drosophila persimilis]
 gb|EDW25148.1|  GL23004 [Drosophila persimilis]
Length=387

 GENE ID: 6588258 Dper\GL23004 | GL23004 gene product from transcript GL23004-RA
[Drosophila persimilis] (10 or fewer PubMed links)

 Score =  531 bits (1368),  Expect = 7e-149, Method: Compositional matrix adjust.
 Identities = 344/397 (87%), Positives = 346/397 (87%), Gaps = 19/397 (5%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGA AYKQDCLNIKADAVNGYKDIWNTGGSNGGG GGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGASAYKQDCLNIKADAVNGYKDIWNTGGSNGGGTGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGG  G   +  +N GNAAN       AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGGAGGNASNGSNAGNAANGQNNA--AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  178

Query  181  GSA-------GGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLH  232
            GSA       GG  S   G    G        AGAGTAWNANCTISG AAAQTAAASSLH
Sbjct  179  GSAGGNVSAGGGGQSGQSGAPGVGVGVGVGVGAGAGTAWNANCTISGAAAAQTAAASSLH  238

Query  233  QASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTN  292
            QASNHTFYPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTN
Sbjct  239  QASNHTFYPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTN  289

Query  293  GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK  352
            GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK
Sbjct  290  GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK  349

Query  353  EIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            EIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  350  EIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  386


>ref|XP_001359066.2|  Ubx [Drosophila pseudoobscura pseudoobscura]
 sp|P20822.3|UBX_DROPS  RecName: Full=Homeotic protein ultrabithorax
 gb|EAL28209.2|  Ubx [Drosophila pseudoobscura pseudoobscura]
Length=385

 GENE ID: 4802074 Dpse\Ubx | GA10294 gene product from transcript GA10294-RA
[Drosophila pseudoobscura pseudoobscura] (10 or fewer PubMed links)

 Score =  531 bits (1368),  Expect = 7e-149, Method: Compositional matrix adjust.
 Identities = 339/397 (85%), Positives = 340/397 (86%), Gaps = 21/397 (5%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGA AYKQDCLNIKADAVNGYKDIWNTGGSNGGG GGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGASAYKQDCLNIKADAVNGYKDIWNTGGSNGGGTGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GG  G      NA        N     AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGAGGNASNGSNAGNAANGQNNA----AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  176

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAG-------TAWNANCTISGAAAQTAAA-SSLH  232
            GSAGGNVS  GG  +      GVGV           TAWNANCTISGAAA   AA SSLH
Sbjct  177  GSAGGNVSAGGGGQSGQSGAPGVGVGVGVGVGAGAGTAWNANCTISGAAAAQTAAASSLH  236

Query  233  QASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTN  292
            QASNHTFYPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTN
Sbjct  237  QASNHTFYPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTN  287

Query  293  GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK  352
            GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK
Sbjct  288  GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK  347

Query  353  EIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            EIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  348  EIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  384


>ref|XP_001999766.1|  GI24708 [Drosophila mojavensis]
 gb|EDW15227.1|  GI24708 [Drosophila mojavensis]
Length=379

 GENE ID: 6573700 Dmoj\GI24708 | GI24708 gene product from transcript GI24708-RA
[Drosophila mojavensis] (10 or fewer PubMed links)

 Score =  527 bits (1357),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 328/393 (83%), Positives = 334/393 (85%), Gaps = 19/393 (5%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAA-YRGFPLSLGMSPYANHHLQR  59
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQT ++AAAA YRGFPLSLGMSPYANHHLQR
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTTASAAAAAYRGFPLSLGMSPYANHHLQR  60

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
            TTQDSPYDASITAACNKIYGD   AYKQDCLNIKADAVNGYKDIWNTGG+NGGGGGGGGG
Sbjct  61   TTQDSPYDASITAACNKIYGDAGSAYKQDCLNIKADAVNGYKDIWNTGGTNGGGGGGGGG  120

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGG--MPVRPSACTPDSRVGGYLDTSGGSPVS  177
            G      T      NG NA N+    N AGG  MPVRPSACTPDSRVGGYLDTSGGSPVS
Sbjct  121  GASAGNTT------NGSNAPNSANGQNNAGGGGMPVRPSACTPDSRVGGYLDTSGGSPVS  174

Query  178  HRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAA-SSLHQASN  236
            HRGG + G  + S G           G  GA TAWNANCTISGAAA   AA SSLHQASN
Sbjct  175  HRGGGSAGGGNGSAGGVPQNTASGVGGGVGAATAWNANCTISGAAAAQTAAASSLHQASN  234

Query  237  HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRR  296
            HTFYPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRR
Sbjct  235  HTFYPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRR  285

Query  297  RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA  356
            RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA
Sbjct  286  RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQA  345

Query  357  IKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            IKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  346  IKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  378


>ref|NP_536748.1|  ultrabithorax, isoform B [Drosophila melanogaster]
 gb|AAF55356.1|  ultrabithorax, isoform B [Drosophila melanogaster]
Length=346

 GENE ID: 42034 Ubx | Ultrabithorax [Drosophila melanogaster]
(Over 100 PubMed links)

 Score =  526 bits (1354),  Expect = 3e-147, Method: Compositional matrix adjust.
 Identities = 346/389 (89%), Positives = 346/389 (89%), Gaps = 43/389 (11%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIA                                           GTNGLRRRGRQ
Sbjct  241  PWMAIA-------------------------------------------GTNGLRRRGRQ  257

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  258  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  317

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  318  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  346


>gb|AAA84410.1|  UBXIVA [Drosophila melanogaster]
Length=346

 Score =  523 bits (1346),  Expect = 2e-146, Method: Compositional matrix adjust.
 Identities = 345/389 (89%), Positives = 345/389 (89%), Gaps = 43/389 (11%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAAC KIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG
Sbjct  61   TQDSPYDASITAACYKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180

Query  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240
            GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY
Sbjct  181  GSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFY  240

Query  241  PWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQ  300
            PWMAIA                                           GTNGLRRRGRQ
Sbjct  241  PWMAIA-------------------------------------------GTNGLRRRGRQ  257

Query  301  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  360
            TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL
Sbjct  258  TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKEL  317

Query  361  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  318  NEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  346


>ref|XP_001990646.1|  GH19471 [Drosophila grimshawi]
 gb|EDV93708.1|  GH19471 [Drosophila grimshawi]
Length=382

 GENE ID: 6563482 Dgri\GH19471 | GH19471 gene product from transcript GH19471-RA
[Drosophila grimshawi] (10 or fewer PubMed links)

 Score =  522 bits (1344),  Expect = 4e-146, Method: Compositional matrix adjust.
 Identities = 321/392 (82%), Positives = 330/392 (84%), Gaps = 14/392 (4%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAA-YRGFPLSLGMSPYANHHLQR  59
            MNSYFEQASGFYGHPHQATGM+MG+GGHHDQT ++AAAA YRGFPLSLGMSPYANHHLQR
Sbjct  1    MNSYFEQASGFYGHPHQATGMSMGTGGHHDQTTASAAAAAYRGFPLSLGMSPYANHHLQR  60

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
            TTQDSPYDASITAACNKIYGD   AYKQDCLNIKADAVNGYKDIWNTGG+   GGGGGGG
Sbjct  61   TTQDSPYDASITAACNKIYGDAGSAYKQDCLNIKADAVNGYKDIWNTGGA--NGGGGGGG  118

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
            G      + G+   N  N  N  G     GGMPVRPSACTPDSRVGGYLDTSGGSPVSHR
Sbjct  119  GATAGNTSNGSQAPNAANGQNNAGGGGGGGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  178

Query  180  GGSAGGNVSVSGGN-GNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAA-SSLHQASNH  237
            GG + G  + S G          G G  GA TAWNANCTISGAAA   AA SSLHQASNH
Sbjct  179  GGGSAGGGNGSAGGVPQNTASGVGGGGVGAATAWNANCTISGAAAAQTAAASSLHQASNH  238

Query  238  TFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  297
            TFYPWMAIAG         KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR
Sbjct  239  TFYPWMAIAG---------KIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR  289

Query  298  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  357
            GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI
Sbjct  290  GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAI  349

Query  358  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  350  KELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  381


>ref|XP_002103144.1|  ultrabithorax [Drosophila simulans]
 gb|EDX12647.1|  ultrabithorax [Drosophila simulans]
Length=338

 GENE ID: 6727783 Dsim\Ubx | Ultrabithorax [Drosophila simulans]
(10 or fewer PubMed links)

 Score =  470 bits (1209),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 295/400 (74%), Positives = 297/400 (74%), Gaps = 73/400 (18%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGS           
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGS-----------  109

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPV----------RPSACT-PDSRVGGYLD  169
                   GG G      AA    Q  PA  M V          R +AC  P  R+     
Sbjct  110  ------NGGGGGGGAVVAAERAEQVEPAMPMAVMRPMQTDRTIRRAACPFPSGRL--LWT  161

Query  170  TSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAAS  229
                 P SHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAAS
Sbjct  162  RRAAVPFSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAAS  221

Query  230  SLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWL  289
            SLHQASNHTFYPWMAIA                                           
Sbjct  222  SLHQASNHTFYPWMAIA-------------------------------------------  238

Query  290  GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK  349
            GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK
Sbjct  239  GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMK  298

Query  350  LKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            LKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  299  LKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  338


>gb|AAC31942.1|  Ultrabithorax homeotic protein IIa [Anopheles gambiae]
Length=327

 Score =  374 bits (961),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 220/373 (59%), Positives = 242/373 (65%), Gaps = 83/373 (22%)

Query  1    MNSYFEQASGFYGHPHQAT-GMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQ-  58
            MNSYFEQ +GFYGHPHQA  GM   +G HHDQT +AAAAAYRGFPLSLGMSPY NHHL  
Sbjct  1    MNSYFEQ-TGFYGHPHQAAAGMMTTTGTHHDQTTAAAAAAYRGFPLSLGMSPYTNHHLHQ  59

Query  59   -RTTQDSPYDASITAACNKIYGDGAGAYK-QDCL------NIKADAVNGYKDIWNTGGSN  110
             RT Q+SPYDASI AAC +IY    G+Y  +DC       N   D  NGYKD+WN     
Sbjct  60   TRTAQESPYDASIQAACKQIY---EGSYSSKDCGTKGTSGNNGTDTSNGYKDVWN-----  111

Query  111  GGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDT  170
                         +G T GA    G   +N   Q N +  +PVRPSACTPDSRVGGY+D 
Sbjct  112  -----------ANSGATNGA--TTGATGSNVPAQQNSS--VPVRPSACTPDSRVGGYIDA  156

Query  171  SGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNAN-CTISGAAA-QTAAA  228
            SGGSPVS R GSA     V G                   +WN N C+++G+   Q A +
Sbjct  157  SGGSPVS-RAGSAAAAAGVPG-------------------SWNTNQCSLTGSTGGQAAPS  196

Query  229  SSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDW  288
            + LHQ SNHTFYPWMAIAG                          KRYSESLAG+LLPDW
Sbjct  197  TGLHQ-SNHTFYPWMAIAG--------------------------KRYSESLAGTLLPDW  229

Query  289  LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM  348
            +G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM
Sbjct  230  IGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM  289

Query  349  KLKKEIQAIKELN  361
            KLKKEIQAIKELN
Sbjct  290  KLKKEIQAIKELN  302


>ref|XP_311623.2|  AGAP004661-PA [Anopheles gambiae str. PEST]
 gb|EAA45000.2|  AGAP004661-PA [Anopheles gambiae str. PEST]
Length=327

 GENE ID: 1272724 AgaP_AGAP004661 | AGAP004661-PA [Anopheles gambiae str. PEST]
(10 or fewer PubMed links)

 Score =  374 bits (961),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 219/373 (59%), Positives = 239/373 (64%), Gaps = 83/373 (22%)

Query  1    MNSYFEQASGFYGHPHQAT-GMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQ-  58
            MNSYFEQ +GFYGHPHQA  GM   +G HHDQT +AAAAAYRGFPLSLGMSPY NHHL  
Sbjct  1    MNSYFEQ-TGFYGHPHQAAAGMMTTTGTHHDQTTAAAAAAYRGFPLSLGMSPYTNHHLHQ  59

Query  59   -RTTQDSPYDASITAACNKIYGDGAGAYK-QDCL------NIKADAVNGYKDIWNTGGSN  110
             RT Q+SPYDASI AAC +IY    G+Y  +DC       N   D  NGYKD+WN     
Sbjct  60   TRTAQESPYDASIQAACKQIY---EGSYSSKDCGTKGTSGNNGTDTSNGYKDVWN-----  111

Query  111  GGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDT  170
                         A      G   GG  +N   Q N    +PVRPSACTPDSRVGGY+D 
Sbjct  112  -------------ANSGATNGATTGGTGSNVPAQQN--SSVPVRPSACTPDSRVGGYIDA  156

Query  171  SGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNAN-CTISGAAA-QTAAA  228
            SGGSPVS R GSA     V G                   +WN N C+++G+   Q A +
Sbjct  157  SGGSPVS-RAGSAAAATGVPG-------------------SWNTNQCSLTGSTGGQAAPS  196

Query  229  SSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDW  288
            + LHQ SNHTFYPWMAIAG                          KRYSESLAG+LLPDW
Sbjct  197  TGLHQ-SNHTFYPWMAIAG--------------------------KRYSESLAGTLLPDW  229

Query  289  LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM  348
            +G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM
Sbjct  230  IGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM  289

Query  349  KLKKEIQAIKELN  361
            KLKKEIQAIKELN
Sbjct  290  KLKKEIQAIKELN  302


>ref|XP_311624.2|  AGAP004661-PB [Anopheles gambiae str. PEST]
 gb|AAC31943.1|  Ultrabithorax homeotic protein IVa [Anopheles gambiae]
 gb|EAA07259.2|  AGAP004661-PB [Anopheles gambiae str. PEST]
Length=310

 GENE ID: 1272724 AgaP_AGAP004661 | AGAP004661-PA [Anopheles gambiae str. PEST]
(10 or fewer PubMed links)

 Score =  333 bits (855),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 204/373 (55%), Positives = 222/373 (60%), Gaps = 100/373 (27%)

Query  1    MNSYFEQASGFYGHPHQAT-GMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQ-  58
            MNSYFEQ +GFYGHPHQA  GM   +G HHDQT +AAAAAYRGFPLSLGMSPY NHHL  
Sbjct  1    MNSYFEQ-TGFYGHPHQAAAGMMTTTGTHHDQTTAAAAAAYRGFPLSLGMSPYTNHHLHQ  59

Query  59   -RTTQDSPYDASITAACNKIYGDGAGAY-KQDC------LNIKADAVNGYKDIWNTGGSN  110
             RT Q+SPYDASI AAC +IY    G+Y  +DC       N   D  NGYKD+WN     
Sbjct  60   TRTAQESPYDASIQAACKQIY---EGSYSSKDCGTKGTSGNNGTDTSNGYKDVWN-----  111

Query  111  GGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDT  170
                         A      G   GG  +N   Q N    +PVRPSACTPDSRVGGY+D 
Sbjct  112  -------------ANSGATNGATTGGTGSNVPAQQN--SSVPVRPSACTPDSRVGGYIDA  156

Query  171  SGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNAN-CTISGAA-AQTAAA  228
            SGGSPVS R GSA     V G                   +WN N C+++G+   Q A +
Sbjct  157  SGGSPVS-RAGSAAAATGVPG-------------------SWNTNQCSLTGSTGGQAAPS  196

Query  229  SSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDW  288
            + LHQ SNHTFYPWMAIA                                          
Sbjct  197  TGLHQ-SNHTFYPWMAIA------------------------------------------  213

Query  289  LGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM  348
             G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM
Sbjct  214  -GANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM  272

Query  349  KLKKEIQAIKELN  361
            KLKKEIQAIKELN
Sbjct  273  KLKKEIQAIKELN  285


>emb|CAA28814.1|  unnamed protein product [Drosophila pseudoobscura]
 prf||1307165A  Ultrabithorax protein
Length=258

 Score =  318 bits (816),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 218/263 (83%), Gaps = 13/263 (5%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGA AYKQDCLNIKADAVNGYKDIWNTGGSNGGG GGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGASAYKQDCLNIKADAVNGYKDIWNTGGSNGGGTGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGG   + G+   N  N  N       AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGGNASNGSNAGNAANGQNNA-----AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  175

Query  181  GSA-------GGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLH  232
            GSA       GG  S   G    G        AGAGTAWNANCTISG AAAQTAAASSLH
Sbjct  176  GSAGGNVSAGGGGQSGQSGAPGVGVGVGVGVGAGAGTAWNANCTISGAAAAQTAAASSLH  235

Query  233  QASNHTFYPWMAIAGECPEDPTK  255
            QASNHTFYPWMAIAGECPEDPTK
Sbjct  236  QASNHTFYPWMAIAGECPEDPTK  258


>emb|CAA28815.1|  unnamed protein product [Drosophila pseudoobscura]
Length=249

 Score =  296 bits (758),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 207/254 (81%), Positives = 209/254 (82%), Gaps = 13/254 (5%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDGA AYKQDCLNIKADAVNGYKDIWNTGGSNGGG GGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGASAYKQDCLNIKADAVNGYKDIWNTGGSNGGGTGGGGGG  120

Query  121  GGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  180
            GGG   + G+   N  N  N       AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG
Sbjct  121  GGGGNASNGSNAGNAANGQNNA-----AGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRG  175

Query  181  GSA-------GGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLH  232
            GSA       GG  S   G    G        AGAGTAWNANCTISG AAAQTAAASSLH
Sbjct  176  GSAGGNVSAGGGGQSGQSGAPGVGVGVGVGVGAGAGTAWNANCTISGAAAAQTAAASSLH  235

Query  233  QASNHTFYPWMAIA  246
            QASNHTFYPWMAIA
Sbjct  236  QASNHTFYPWMAIA  249


>prf||1307165C  Ultrabithorax protein
Length=250

 Score =  290 bits (741),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 189/256 (74%), Positives = 199/256 (78%), Gaps = 15/256 (6%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGM+MG+ GHHDQ+A+AAAAAYRGFPLSLGM+PY NHHLQR+
Sbjct  1    MNSYFEQASGFYGHPHQATGMSMGTAGHHDQSATAAAAAYRGFPLSLGMTPYTNHHLQRS  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGG  120
            TQDSPYDASITAACNKIYGDG  AYKQDCLNIK+D +NGYKDIWNT  + GG GGGGG G
Sbjct  61   TQDSPYDASITAACNKIYGDG-NAYKQDCLNIKSDTINGYKDIWNTTANGGGAGGGGGTG  119

Query  121  GGGAGGTGGAGNANGGNAANANGQNNP-------AGGMPVRPSACTPDSRVGGYLDTSGG  173
            GGG G  G A  A       ANGQN          GGMPVRPSACTPDSRVGGYLDTSGG
Sbjct  120  GGGGGSAGSANGA----NNTANGQNTSGGGGAGGGGGMPVRPSACTPDSRVGGYLDTSGG  175

Query  174  SPVSHRGGSAGGNVSVSGGNGNAG--GVQSGVGVAGAGTAWNANCTISGAAAQTAAASSL  231
            SPVSHRGGSAG       G G +G      G G  G  TAWNANCTISGAAA    ASSL
Sbjct  176  SPVSHRGGSAGVVGGAGTGVGQSGQSANVGGAGGVGGATAWNANCTISGAAA-AQTASSL  234

Query  232  HQASNHTFYPWMAIAG  247
            HQASNHTFYPWMAIAG
Sbjct  235  HQASNHTFYPWMAIAG  250


>sp|P05048.1|UBX_DROFU  RecName: Full=Homeotic protein ultrabithorax
 emb|CAA28811.1|  unnamed protein product [Drosophila funebris]
 prf||1307165B  Ultrabithorax protein
Length=253

 Score =  289 bits (739),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 193/257 (75%), Positives = 202/257 (79%), Gaps = 6/257 (2%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAA-YRGFPLSLGMSPYANHHLQR  59
            MNSYFEQASGFYGHPHQA+GMAMGSGGHHDQT ++AAAA YRGF L LGMSPYANHHLQR
Sbjct  1    MNSYFEQASGFYGHPHQASGMAMGSGGHHDQTTASAAAAAYRGFTLPLGMSPYANHHLQR  60

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
            TTQDSPYDASITAACNKIYGD   AYKQDCLNIKADAVNGYKDIWNTGG+NGGGGGGGGG
Sbjct  61   TTQDSPYDASITAACNKIYGDAGSAYKQDCLNIKADAVNGYKDIWNTGGANGGGGGGGGG  120

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
                   + G+   N  N  N  G     GGMPVRPSACTPDSRVGGYLDTSGGSPVSHR
Sbjct  121  AATAGNTSNGSNAPNAANGQNNAG----GGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  176

Query  180  GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLHQASNHT  238
            GG + G  + + G           G  GAGTAWNANCTISG AAAQTAAASSLHQ  NHT
Sbjct  177  GGGSAGGGNGTAGGVPQNSASGVGGGVGAGTAWNANCTISGAAAAQTAAASSLHQPGNHT  236

Query  239  FYPWMAIAGECPEDPTK  255
            FYPWMAIAGE   DP K
Sbjct  237  FYPWMAIAGESTADPIK  253


>pir||B33144  homeotic protein Ultrabithorax - house fly (fragment)
Length=249

 Score =  287 bits (735),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 188/255 (74%), Positives = 198/255 (78%), Gaps = 15/255 (6%)

Query  2    NSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRTT  61
            NSYFEQASGFYGHPHQATGM+MG+ GHHDQ+A+AAAAAYRGFPLSLGM+PY NHHLQR+T
Sbjct  1    NSYFEQASGFYGHPHQATGMSMGTAGHHDQSATAAAAAYRGFPLSLGMTPYTNHHLQRST  60

Query  62   QDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGGG  121
            QDSPYDASITAACNKIYGDG  AYKQDCLNIK+D +NGYKDIWNT  + GG GGGGG GG
Sbjct  61   QDSPYDASITAACNKIYGDG-NAYKQDCLNIKSDTINGYKDIWNTTANGGGAGGGGGTGG  119

Query  122  GGAGGTGGAGNANGGNAANANGQNNP-------AGGMPVRPSACTPDSRVGGYLDTSGGS  174
            GG G  G A  A       ANGQN          GGMPVRPSACTPDSRVGGYLDTSGGS
Sbjct  120  GGGGSAGSANGA----NNTANGQNTSGGGGAGGGGGMPVRPSACTPDSRVGGYLDTSGGS  175

Query  175  PVSHRGGSAGGNVSVSGGNGNAG--GVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLH  232
            PVSHRGGSAG       G G +G      G G  G  TAWNANCTISGAAA    ASSLH
Sbjct  176  PVSHRGGSAGVVGGAGTGVGQSGQSANVGGAGGVGGATAWNANCTISGAAA-AQTASSLH  234

Query  233  QASNHTFYPWMAIAG  247
            QASNHTFYPWMAIAG
Sbjct  235  QASNHTFYPWMAIAG  249


>sp|Q25451.1|UBX_MUSDO  RecName: Full=Homeotic protein ultrabithorax
 emb|CAA28813.1|  Ubx protein [Musca domestica]
Length=248

 Score =  286 bits (732),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 187/254 (74%), Positives = 197/254 (78%), Gaps = 15/254 (6%)

Query  2    NSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRTT  61
            NSYFEQASGFYGHPHQATGM+MG+ GHHDQ+A+AAAAAYRGFPLSLGM+PY NHHLQR+T
Sbjct  1    NSYFEQASGFYGHPHQATGMSMGTAGHHDQSATAAAAAYRGFPLSLGMTPYTNHHLQRST  60

Query  62   QDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGGG  121
            QDSPYDASITAACNKIYGDG  AYKQDCLNIK+D +NGYKDIWNT  + GG GGGGG GG
Sbjct  61   QDSPYDASITAACNKIYGDG-NAYKQDCLNIKSDTINGYKDIWNTTANGGGAGGGGGTGG  119

Query  122  GGAGGTGGAGNANGGNAANANGQNNP-------AGGMPVRPSACTPDSRVGGYLDTSGGS  174
            GG G  G A  A       ANGQN          GGMPVRPSACTPDSRVGGYLDTSGGS
Sbjct  120  GGGGSAGSANGA----NNTANGQNTSGGGGAGGGGGMPVRPSACTPDSRVGGYLDTSGGS  175

Query  175  PVSHRGGSAGGNVSVSGGNGNAG--GVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLH  232
            PVSHRGGSAG       G G +G      G G  G  TAWNANCTISGAAA    ASSLH
Sbjct  176  PVSHRGGSAGVVGGAGTGVGQSGQSANVGGAGGVGGATAWNANCTISGAAA-AQTASSLH  234

Query  233  QASNHTFYPWMAIA  246
            QASNHTFYPWMAIA
Sbjct  235  QASNHTFYPWMAIA  248


>emb|CAA28812.1|  unnamed protein product [Drosophila funebris]
Length=244

 Score =  279 bits (714),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 188/248 (76%), Positives = 197/248 (79%), Gaps = 6/248 (2%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAA-YRGFPLSLGMSPYANHHLQR  59
            MNSYFEQASGFYGHPHQA+GMAMGSGGHHDQT ++AAAA YRGF L LGMSPYANHHLQR
Sbjct  1    MNSYFEQASGFYGHPHQASGMAMGSGGHHDQTTASAAAAAYRGFTLPLGMSPYANHHLQR  60

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
            TTQDSPYDASITAACNKIYGD   AYKQDCLNIKADAVNGYKDIWNTGG+NGGGGGGGGG
Sbjct  61   TTQDSPYDASITAACNKIYGDAGSAYKQDCLNIKADAVNGYKDIWNTGGANGGGGGGGGG  120

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
                   + G+   N  N  N  G     GGMPVRPSACTPDSRVGGYLDTSGGSPVSHR
Sbjct  121  AATAGNTSNGSNAPNAANGQNNAG----GGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  176

Query  180  GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG-AAAQTAAASSLHQASNHT  238
            GG + G  + + G           G  GAGTAWNANCTISG AAAQTAAASSLHQ  NHT
Sbjct  177  GGGSAGGGNGTAGGVPQNSASGVGGGVGAGTAWNANCTISGAAAAQTAAASSLHQPGNHT  236

Query  239  FYPWMAIA  246
            FYPWMAIA
Sbjct  237  FYPWMAIA  244


>ref|NP_001034497.1|  ultrabithorax [Tribolium castaneum]
 gb|AAL71874.1|  ultrabithorax [Tribolium castaneum]
 gb|EEZ99249.1|  ultrabithorax [Tribolium castaneum]
Length=314

 GENE ID: 641535 Ubx | ultrabithorax [Tribolium castaneum]
(10 or fewer PubMed links)

 Score =  272 bits (696),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 182/384 (47%), Positives = 207/384 (54%), Gaps = 118/384 (31%)

Query  1    MNSYFEQASGFYG-HPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHH---  56
            MNSYFEQ SGFYG H HQ+  +A    GHH + ++AAAAAYR FPLSLGMSPYA+     
Sbjct  1    MNSYFEQ-SGFYGSHHHQSGSVA----GHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHH  55

Query  57   --LQ-RTTQDSPYDASITAACNKIYGDG------AGAYKQDCLNIKADAVNGY-------  100
              LQ R  QDSPYDAS+ AAC     +G      +   K DC    AD  NGY       
Sbjct  56   HHLQARPPQDSPYDASVAAACKLYSSEGQQNSNYSSNSKPDCSKGNADQ-NGYASVVAAA  114

Query  101  --KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSAC  158
              KD+W +  S GG                            AN  N+  G  PVRP+AC
Sbjct  115  AVKDVWQSATSGGG----------------------------ANLTNSLTG--PVRPAAC  144

Query  159  TPDSRVG-GYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCT  217
            TPDSRVG G +   GG P S  G +AG                      G   +WN  C+
Sbjct  145  TPDSRVGYGSVGLVGGDPASSPGAAAGR--------------------TGNSLSWNNPCS  184

Query  218  ISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYS  277
            I+  ++Q    + +HQ +NHTFYPWMAIA                               
Sbjct  185  INSTSSQ-PVGTQIHQQTNHTFYPWMAIA-------------------------------  212

Query  278  ESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTER  337
            +S+         G NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTER
Sbjct  213  DSMT-------FGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTER  265

Query  338  QIKIWFQNRRMKLKKEIQAIKELN  361
            QIKIWFQNRRMKLKKEIQAIKELN
Sbjct  266  QIKIWFQNRRMKLKKEIQAIKELN  289


>ref|NP_001162171.1|  ultrabithorax [Apis mellifera]
 gb|ACZ56139.1|  ultrabithorax [Apis mellifera]
Length=330

 GENE ID: 551594 Ubx | ultrabithorax [Apis mellifera] (10 or fewer PubMed links)

 Score =  256 bits (655),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 176/406 (43%), Positives = 200/406 (49%), Gaps = 146/406 (36%)

Query  1    MNSYFEQ-ASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYA----NH  55
            MNSYFEQ A GFYG  H  TG A     HHD    A AAAYR FPL LGMSPYA    +H
Sbjct  1    MNSYFEQTAGGFYGSHHHQTGAA---SQHHD---PATAAAYRSFPLGLGMSPYASTQHHH  54

Query  56   HLQ-------------RTTQDSPYDASITAACNKIY-------GDGAGAYK----QDCLN  91
            H               R  QDSPYDAS+  AC K+Y       G    +Y     +DC  
Sbjct  55   HTSSSLGIHPGGGTNTRPPQDSPYDASVATAC-KLYSTTPEATGHTTSSYSTTAAKDCKQ  113

Query  92   IKADAV--NGY---------KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAAN  140
                +   NGY         KD+W +  S                               
Sbjct  114  QDQASAHQNGYAAVMAAAAVKDVWQSATSG------------------------------  143

Query  141  ANGQNNPAGGMPVRPSACTPD-SRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGV  199
            AN Q+N      VRPSACTP+ +RVG Y            GG  GG+ + S GN ++   
Sbjct  144  ANSQSNSV----VRPSACTPEGTRVGSY------------GGLVGGDPASSPGNNSSS--  185

Query  200  QSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIR  259
                      ++WN  C+++ +A+Q  A     Q SNHTFYPWMAIAG            
Sbjct  186  ------RSLTSSWNT-CSLNSSASQPVATQLHQQPSNHTFYPWMAIAG------------  226

Query  260  SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY  319
                                            NG+RRRGRQTYTRYQTLELEKEFHTNHY
Sbjct  227  -------------------------------ANGMRRRGRQTYTRYQTLELEKEFHTNHY  255

Query  320  LTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEK  365
            LTRRRRIEMAH+LCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEK
Sbjct  256  LTRRRRIEMAHSLCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEK  301


>ref|XP_001603621.1|  PREDICTED: similar to ultrabithorax [Nasonia vitripennis]
Length=350

 GENE ID: 100119924 LOC100119924 | similar to ultrabithorax
[Nasonia vitripennis] (10 or fewer PubMed links)

 Score =  246 bits (629),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 174/410 (42%), Positives = 198/410 (48%), Gaps = 140/410 (34%)

Query  1    MNSYFEQ-ASGFYG-HPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQ  58
            MNSYFEQ ASGFYG H HQ++  A     HHD    A AAAYR FPL LGMSPYA+    
Sbjct  1    MNSYFEQSASGFYGSHHHQSSAAAQ----HHD---PATAAAYRSFPLGLGMSPYASSQHH  53

Query  59   -----------------RTTQDSPYDASITAACNKIYGDGAGA--------------YKQ  87
                             R  QDSPYDAS+  AC K+Y     A                +
Sbjct  54   HHSSSSLGIHPGGGTNTRPPQDSPYDASVATAC-KLYSSTPEASGHSTSSYTAAAAAASK  112

Query  88   DCLN----IKADAVNGY---------KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNAN  134
            DC      + A   NGY         KD+W T  +   G  G G  G             
Sbjct  113  DCKQQEQAVAAAHQNGYAAVMAAAAVKDVWQTASAVASGQSGAGTRG-------------  159

Query  135  GGNAANANGQNNPAGGMPVRPSACTPD-SRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGN  193
                        PA      PSACTP+ SRVG Y            G  +GG+ + S GN
Sbjct  160  ------------PATPRWCAPSACTPEGSRVGSY-----------SGLVSGGDAASSPGN  196

Query  194  GNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQ--ASNHTFYPWMAIAGECPE  251
              +             ++WN  C+++ +A     A+ LHQ   +NHTFYPWMAIA    +
Sbjct  197  NGS--------SRSLSSSWN-TCSLNTSATSQPVATQLHQQPTANHTFYPWMAIA----D  243

Query  252  DPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELE  311
             P+                                   G NGLRRRGRQTYTRYQTLELE
Sbjct  244  SPS----------------------------------FGANGLRRRGRQTYTRYQTLELE  269

Query  312  KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELN  361
            KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELN
Sbjct  270  KEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELN  319


>gb|AEB15973.1|  ultrabithorax isoform IV [Oncopeltus fasciatus]
Length=295

 Score =  244 bits (624),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 173/390 (44%), Positives = 193/390 (49%), Gaps = 148/390 (38%)

Query  1    MNSYFEQASGFYG-HPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYAN-----  54
            MNSYFEQ +GFYG H HQ+      +  HHDQTA    AAYR FPL +GMSPYA+     
Sbjct  1    MNSYFEQ-TGFYGSHHHQS-----ATAAHHDQTA----AAYR-FPLGIGMSPYASTQHHH  49

Query  55   ---HHLQRTTQDSPYDASITAACNKIYGDGAG---------AYKQDCLNIK-ADAVNGY-  100
                H  R  QDSPYDAS+TA   K+Y   AG           K DC   + A   NGY 
Sbjct  50   HHSLHQSRPPQDSPYDASVTAC--KLYSSAAGENQTSVNYSTTKPDCSKTEPATHQNGYA  107

Query  101  --------KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMP  152
                    KD+W +  S                GT  A               NP     
Sbjct  108  AVVAAAAAKDVWQSAAS----------------GTPSA---------------NPL----  132

Query  153  VRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAW  212
            VRP+ACTPD+R   YL                      GG+G+ G V      + A  +W
Sbjct  133  VRPAACTPDTR---YL----------------------GGDGSPGAVSRTSSASLAPASW  167

Query  213  NANCTISGAAAQTAAASSLHQ-ASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTD  271
            N  C+++  A Q A    LHQ  +NHTFYPWMAIAG                        
Sbjct  168  N-QCSLNTTATQPAG--QLHQQPANHTFYPWMAIAG------------------------  200

Query  272  MGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA  331
                                NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA
Sbjct  201  -------------------ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA  241

Query  332  LCLTERQIKIWFQNRRMKLKKEIQAIKELN  361
            LCLTERQIKIWFQNRRMKLKKEIQAIKELN
Sbjct  242  LCLTERQIKIWFQNRRMKLKKEIQAIKELN  271


>ref|XP_002041171.1|  GM15409 [Drosophila sechellia]
 gb|EDW44819.1|  GM15409 [Drosophila sechellia]
Length=136

 GENE ID: 6616835 Dsec\GM15409 | GM15409 gene product from transcript GM15409-RA
[Drosophila sechellia] (10 or fewer PubMed links)

 Score =  242 bits (618),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT
Sbjct  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60

Query  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGG  117
            TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGG
Sbjct  61   TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGG  117


>gb|ABD16212.1|  ultrabithorax [Strigamia maritima]
Length=267

 Score =  225 bits (574),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 157/390 (40%), Positives = 175/390 (45%), Gaps = 141/390 (36%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRT  60
            MNSYF+Q  GFYG        + GSG            AYR FPL L + PY      R 
Sbjct  1    MNSYFDQG-GFYG--------SQGSGEQ----------AYR-FPLGLTVPPYPQPQT-RA  39

Query  61   TQDSPYDASITAACNKIYG------DGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGG  114
             QDS YD+  T +  K+Y       DG  AYK DC                         
Sbjct  40   HQDSSYDSPATGSPCKLYSSSTASTDGQPAYKSDC-------------------------  74

Query  115  GGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGS  174
                           A + NG ++        P G +PVRP+A TPDS V  +   +G S
Sbjct  75   --------------AAKDQNGYSSTAKEVTAWPGGSLPVRPAAYTPDS-VRSFAGETGAS  119

Query  175  PVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQA  234
            P      S                             W   C  + ++  TAA+     A
Sbjct  120  PRDRVPNS-----------------------------WTQCCQNTNSS--TAASPVQQPA  148

Query  235  SNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGL  294
            +NHTFYPWMAIAG                                            NGL
Sbjct  149  TNHTFYPWMAIAG-------------------------------------------ANGL  165

Query  295  RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI  354
            RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI
Sbjct  166  RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEI  225

Query  355  QAIKELNEQEKQAQAQKAAAAAAAAAAVQG  384
            QAIKELNEQEKQAQ  K AA        QG
Sbjct  226  QAIKELNEQEKQAQTAKTAATLQPTTNSQG  255


>gb|ADO33070.1|  ultrabithorax [Biston betularia]
Length=232

 Score =  212 bits (540),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 156/368 (42%), Positives = 168/368 (46%), Gaps = 137/368 (37%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS-PYANHHLQR  59
            MNSYFEQ  GFYG              H           YRGFPL L  + P+A H  Q 
Sbjct  1    MNSYFEQG-GFYG-------------AHGVHQGGGGGDQYRGFPLGLTYAQPHALH--QP  44

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
              QDSPYDAS+ AAC K+Y       K DC    A+  NGY              GG  G
Sbjct  45   RPQDSPYDASVAAAC-KLYAGEQQYAKTDCSKPGAEQQNGY--------------GGKEG  89

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
             G G G                           VRP+ACTP++R      +   SP    
Sbjct  90   WGSGLGAL-------------------------VRPAACTPEARY-----SESSSP----  115

Query  180  GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTF  239
                                       G    W   C + G+AA  A     HQ +NHTF
Sbjct  116  ---------------------------GRALPWGNQCALPGSAAAAAQPVQ-HQPTNHTF  147

Query  240  YPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR  299
            YPWMAIAG                                            NGLRRRGR
Sbjct  148  YPWMAIAG-------------------------------------------ANGLRRRGR  164

Query  300  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  359
            QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
Sbjct  165  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  224

Query  360  LNEQEKQA  367
            LNEQEKQA
Sbjct  225  LNEQEKQA  232


>sp|Q8T940.1|UBX_JUNCO  RecName: Full=Homeotic protein ultrabithorax; AltName: Full=JcUbx
 gb|AAL71873.1|  ultrabithorax [Junonia coenia]
Length=253

 Score =  209 bits (533),  Expect = 5e-52, Method: Compositional matrix adjust.
 Identities = 154/365 (42%), Positives = 166/365 (45%), Gaps = 138/365 (38%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS-PYANHHLQR  59
            MNSYFEQ  GFYG              H           YRGFPL L  + P+A H  Q 
Sbjct  1    MNSYFEQG-GFYG-------------AHGVHQGGGGGDQYRGFPLGLTYAQPHALH--QP  44

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
              QDSPYDAS+ AAC K+Y       K DC                   S  GG    G 
Sbjct  45   RPQDSPYDASVAAAC-KLYAGEQQYAKADC-------------------SKAGGEQQNGY  84

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
            GG  A G+G                     G  VRP+ACTP++R      +   SP    
Sbjct  85   GGKEAWGSGL--------------------GALVRPAACTPEARY-----SESSSP----  115

Query  180  GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTF  239
                                       G    W   C + GAAA  +A    HQ +NHTF
Sbjct  116  ---------------------------GRALPWGNQCALPGAAA--SAQPVQHQPTNHTF  146

Query  240  YPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGR  299
            YPWMAIAG                                            NGLRRRGR
Sbjct  147  YPWMAIAG-------------------------------------------ANGLRRRGR  163

Query  300  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  359
            QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
Sbjct  164  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE  223

Query  360  LNEQE  364
            LNEQE
Sbjct  224  LNEQE  228


>ref|XP_001660723.1|  hypothetical protein AaeL_AAEL010298 [Aedes aegypti]
 ref|XP_001664253.1|  hypothetical protein AaeL_AAEL014032 [Aedes aegypti]
 gb|EAT33692.1|  conserved hypothetical protein [Aedes aegypti]
 gb|EAT37740.1|  conserved hypothetical protein [Aedes aegypti]
Length=227

 GENE ID: 5573109 AaeL_AAEL010298 | hypothetical protein [Aedes aegypti]
(10 or fewer PubMed links)

 Score =  209 bits (531),  Expect = 7e-52, Method: Compositional matrix adjust.
 Identities = 136/261 (52%), Positives = 156/261 (60%), Gaps = 61/261 (23%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQ--  58
            MNSYFEQ +GFYGHPHQA GM   +G HHDQT +AAAAAYRGFPLSLGMSPY NHHL   
Sbjct  1    MNSYFEQ-TGFYGHPHQAAGMMTTTGTHHDQTTAAAAAAYRGFPLSLGMSPYTNHHLHQS  59

Query  59   RTTQDSPYDASITAACNKIYGDGAGAYK-QDC-----LNIKADAVNGYKDIWNTGGSNGG  112
            R++QDSPYDAS+ AAC +IY    G+Y  +DC      N   D  NGYKD+WN+  +   
Sbjct  60   RSSQDSPYDASLQAACKQIY---EGSYSTKDCGKTGGGNGTTDTTNGYKDVWNSTNT---  113

Query  113  GGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPA---GGMPVRPSACTPDSRVGGYLD  169
                               +A   N   A G N PA     +PVRPSACTPDSRVGGY+D
Sbjct  114  -------------------SATNSNTNTATGGNVPAQQNSSVPVRPSACTPDSRVGGYID  154

Query  170  TSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNAN-CTISGAA-AQTAA  227
             SGGSPVS  G +A                    GV G    WN N CT++G+A  QTA 
Sbjct  155  ASGGSPVSRTGSTA------------------ATGVTG---TWNTNQCTLTGSAGGQTAP  193

Query  228  ASSLHQASNHTFYPWMAIAGE  248
             + LHQ SNHTFYPWMAIAGE
Sbjct  194  TTGLHQ-SNHTFYPWMAIAGE  213


>ref|XP_002041174.1|  GM15411 [Drosophila sechellia]
 gb|EDW44822.1|  GM15411 [Drosophila sechellia]
Length=201

 GENE ID: 6616838 Dsec\GM15411 | GM15411 gene product from transcript GM15411-RA
[Drosophila sechellia] (10 or fewer PubMed links)

 Score =  208 bits (530),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 108/120 (90%), Gaps = 2/120 (2%)

Query  270  TDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMA  329
            T + +R+   +  +L+     TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMA
Sbjct  84   TPLAQRHP--ICQALISARHCTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMA  141

Query  330  HALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  389
            HALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ
Sbjct  142  HALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ  201


>ref|NP_001107632.1|  ultrabithorax [Bombyx mori]
 gb|ABY66345.1|  homeobox protein [Bombyx mori]
 dbj|BAI67747.1|  Ultrabithorax [Bombyx mori]
Length=254

 GENE ID: 100135425 Ubx | ultrabithorax [Bombyx mori] (10 or fewer PubMed links)

 Score =  207 bits (527),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 168/366 (46%), Gaps = 139/366 (38%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS-PYANHHLQR  59
            MNSYFEQ  GFYG              H           YRGFPL L  + P+A H  Q 
Sbjct  1    MNSYFEQG-GFYG-------------AHGVHQGGGGGDQYRGFPLGLTYAQPHALH--QP  44

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
              QDSPYDAS+ AAC K+Y       K DC                   S  GG    G 
Sbjct  45   RPQDSPYDASVAAAC-KLYAGEQQYPKADC-------------------SKPGGEQQNGY  84

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
            GG  A G+G                     G  VRP+ACTP++R      +   SP    
Sbjct  85   GGKEAWGSGL--------------------GALVRPAACTPEARY-----SESSSP----  115

Query  180  GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQ-ASNHT  238
                                       G    W   C + G+AA  +AA  +HQ  +NHT
Sbjct  116  ---------------------------GRALPWGNQCALPGSAA--SAAQPVHQQPTNHT  146

Query  239  FYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRG  298
            FYPWMAIAG                                            NGLRRRG
Sbjct  147  FYPWMAIAG-------------------------------------------ANGLRRRG  163

Query  299  RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIK  358
            RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIK
Sbjct  164  RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIK  223

Query  359  ELNEQE  364
            ELNEQE
Sbjct  224  ELNEQE  229


>gb|ABY66344.1|  homeobox protein [Bombyx mori]
Length=254

 GENE ID: 100135425 Ubx | ultrabithorax [Bombyx mori] (10 or fewer PubMed links)

 Score =  207 bits (527),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 168/366 (46%), Gaps = 139/366 (38%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS-PYANHHLQR  59
            MNSYFEQ  GFYG              H           YRGFPL L  + P+A H  Q 
Sbjct  1    MNSYFEQG-GFYG-------------AHGVHQGGGGGDQYRGFPLGLTYAQPHALH--QP  44

Query  60   TTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGG  119
              QDSPYDAS+ AAC K+Y       K DC                   S  GG    G 
Sbjct  45   RPQDSPYDASVAAAC-KLYAGEQQYPKADC-------------------SKPGGEQQNGY  84

Query  120  GGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHR  179
            GG  A G+G                     G  VRP+ACTP++R      +   SP    
Sbjct  85   GGKEAWGSGL--------------------GALVRPAACTPEARY-----SESSSP----  115

Query  180  GGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQ-ASNHT  238
                                       G    W   C + G+AA  +AA  +HQ  +NHT
Sbjct  116  ---------------------------GRALPWGNQCALPGSAA--SAAQPVHQQPTNHT  146

Query  239  FYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRG  298
            FYPWMAIAG                                            NGLRRRG
Sbjct  147  FYPWMAIAG-------------------------------------------ANGLRRRG  163

Query  299  RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIK  358
            RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIK
Sbjct  164  RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIK  223

Query  359  ELNEQE  364
            ELNEQE
Sbjct  224  ELNEQE  229


>ref|XP_001842682.1|  conserved hypothetical protein [Culex quinquefasciatus]
 gb|EDS27384.1|  conserved hypothetical protein [Culex quinquefasciatus]
Length=275

 GENE ID: 6032015 CpipJ_CPIJ001012 | hypothetical protein
[Culex quinquefasciatus]

 Score =  201 bits (512),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 150/257 (58%), Gaps = 56/257 (22%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQ--  58
            MNSYFEQ +GFYGHPHQA GM   +G HHDQT +AAAAAYRGFPLSLGMSPY NHHL   
Sbjct  1    MNSYFEQ-TGFYGHPHQAAGMMSSTGTHHDQTTAAAAAAYRGFPLSLGMSPYTNHHLHQS  59

Query  59   RTTQDSPYDASITAACNKIYGDGAGAYK-QDC-----LNIKADAVNGYKDIWNTGGSNGG  112
            R++QDSPYDAS+ AAC +IY    G+Y  +DC      N   D  NGYKD+WN+      
Sbjct  60   RSSQDSPYDASLQAACKQIY---EGSYSTKDCGKTGSGNGTTDTTNGYKDVWNS------  110

Query  113  GGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSG  172
                          +    N N   A N   Q N    +PVRPSACTPDSRVGGY+D SG
Sbjct  111  -----------TNASANNSNTNTVTAGNVPAQQN--SSVPVRPSACTPDSRVGGYIDASG  157

Query  173  GSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNAN-CTISGAAA--QTAAAS  229
            GSPVS  G +A                    GV G    WN N C+I+GA    Q A  +
Sbjct  158  GSPVSRTGSTA------------------ATGVTG---TWNTNQCSITGATTGGQPAPTT  196

Query  230  SLHQASNHTFYPWMAIA  246
             LHQ SNHTFYPWMAIA
Sbjct  197  GLHQ-SNHTFYPWMAIA  212


>ref|XP_001944459.2|  PREDICTED: homeotic protein ultrabithorax-like [Acyrthosiphon 
pisum]
Length=339

 Score =  196 bits (499),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 161/370 (44%), Positives = 182/370 (49%), Gaps = 63/370 (17%)

Query  1    MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYA---NHHL  57
            MNSYFEQ+  + G           S  HHDQ  +A AAAYR FP+ LGMSPYA   +HH 
Sbjct  1    MNSYFEQSGFYGG----HHHHQSSSAHHHDQ--NAVAAAYR-FPIGLGMSPYASSQHHHH  53

Query  58   Q-----RTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGG  112
                  R  QDSPYDAS+ AA  K+YG   G      +        G       GG    
Sbjct  54   HGLSQSRAPQDSPYDASVAAAACKLYGSSGGGGGGGGVGGGGGGGGGGGSG-GGGGDQSS  112

Query  113  GGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSG  172
                   G          G ++   AA+ NG  +    + V P      +  G  L  + 
Sbjct  113  AAAVAAAGLNYTKTEPCVGKSDAAAAAHQNGYASSPKDV-VWPGNAASAAANGSLLRPNV  171

Query  173  GSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTA-WNANCTISGAAAQTAAASSL  231
             +P S R G   GN SVSG +G      S    AG+ +A WN    I+    Q  A    
Sbjct  172  CTPES-RVGYGSGN-SVSGLDGAGASPNSARNSAGSLSASWNTCTGINNNGHQQQALQLN  229

Query  232  HQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGT  291
             Q +NHTFYPWMAIA                                           G 
Sbjct  230  QQQNNHTFYPWMAIA-------------------------------------------GA  246

Query  292  NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK  351
            NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK
Sbjct  247  NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK  306

Query  352  KEIQAIKELN  361
            KEIQAIKELN
Sbjct  307  KEIQAIKELN  316


>emb|CBK55567.1|  ultrabithorax [Glomeris marginata]
Length=335

 Score =  186 bits (473),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 107/187 (57%), Gaps = 44/187 (24%)

Query  196  AGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTK  255
            A G  S  GVA   ++W   C          +      A+NHTFYPWMAIAG        
Sbjct  188  AVGSCSRAGVAPPPSSWT-QCCQPNLGTTIPSQQQQQPAANHTFYPWMAIAG--------  238

Query  256  SKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFH  315
                                                NGLRRRGRQTYTRYQTLELEKEFH
Sbjct  239  -----------------------------------ANGLRRRGRQTYTRYQTLELEKEFH  263

Query  316  TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAA  375
            TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQ  K   +
Sbjct  264  TNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQTTKGPVS  323

Query  376  AAAAAAV  382
            +   A V
Sbjct  324  SDNPAGV  330


>gb|AAD38009.1|AF146649_1  ultrathorax [Tribolium castaneum]
Length=96

 GENE ID: 641535 Ubx | ultrabithorax [Tribolium castaneum]
(10 or fewer PubMed links)

 Score =  181 bits (460),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 89/90 (99%), Positives = 89/90 (99%), Gaps = 0/90 (0%)

Query  292  NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK  351
            NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK
Sbjct  2    NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLK  61

Query  352  KEIQAIKELNEQEKQAQAQKAAAAAAAAAA  381
            KEIQAIKELNEQEKQAQAQKAAAAAAA AA
Sbjct  62   KEIQAIKELNEQEKQAQAQKAAAAAAAVAA  91


>dbj|BAE97004.1|  Ultrabithorax [Procambarus clarkii]
 dbj|BAE97006.1|  Ultrabithorax [Procambarus clarkii]
Length=233

 Score =  179 bits (453),  Expect = 9e-43, Method: Compositional matrix adjust.
 Identities = 93/141 (66%), Positives = 93/141 (66%), Gaps = 40/141 (28%)

Query  234  ASNHTFYPWMAIAGE--CPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWL-G  290
             SN TFYPWMAIA    CP                                     W  G
Sbjct  94   PSNTTFYPWMAIAARNNCP-------------------------------------WTSG  116

Query  291  TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKL  350
             NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHA CLTERQIKIWFQNRRMKL
Sbjct  117  ANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAPCLTERQIKIWFQNRRMKL  176

Query  351  KKEIQAIKELNEQEKQAQAQK  371
            KKEIQAIKELNEQEKQAQA K
Sbjct  177  KKEIQAIKELNEQEKQAQASK  197


>ref|XP_002041172.1|  GM15410 [Drosophila sechellia]
 gb|EDW44820.1|  GM15410 [Drosophila sechellia]
Length=114

 GENE ID: 6616836 Dsec\GM15410 | GM15410 gene product from transcript GM15410-RA
[Drosophila sechellia] (10 or fewer PubMed links)

 Score =  177 bits (449),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  151  MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGT  210
            MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGT
Sbjct  1    MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGT  60

Query  211  AWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIA  246
            AWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIA
Sbjct  61   AWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIA  96